Ription in Systems Theory. The Open Cybernetics and Systemics Journal 2008, 2:252-262. Abel DL, Trevors JT: Three subsets of sequence complexity and their relevance to biopolymeric information. Theor Biol Med Model 2005, 2:29. Durston KK, Chiu DK, Abel DL, Trevors JT: Measuring the functional sequence complexity of proteins. Theor Biol Med Model 2007, 4:47. Durston KK, Chiu DKY: Chapter 5. Functional Sequence Complexity in Biopolymers. In The First Gene: PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/28151467 The Birth of Programming, Messaging and Formal Control. Edited by: Abel DL. New York, N.Y: LongView Press-Academic; 2011:117-134. Stone HS: Introduction to Computer Organization and Data Structures New York, McGraw-Hill; 1972. Harvey B: Computer Science Logo Style Massachusetts London, England, The MIT Press; 1997. Baer RM, Martinez HM: Automata and biology. Annu Rev Biophys Bioeng 1974, 3(0):255-91. Martinez-Perez IM, Zimmermann KH, Ignatova Z: An autonomous DNA model for finite state automata. Int J Bioinform Res Appl 2009, 5(1):81-96. Mizas C, Sirakoulis G, Mardiris V, Karafyllidis I, Glykos N, Sandaltzopoulos R: Reconstruction of DNA sequences using genetic algorithms and cellular automata: towards mutation prediction? Biosystems 2008, 92(1):61-8. Yang J, Meng X, Hlavacek WS: Rule-based modelling and simulation of biochemical systems with molecular finite automata. IET Syst Biol 2010, 4(6):453-66. Leung S, Mellish C, Robertson D: Basic Gene Grammars and DNA-ChartParser for language processing of Escherichia coli promoter DNA sequences. Bioinformatics 2001, 17(3):226-36. Chomsky N: Three Models for the C.I. 75535 clinical trials Description of Language. IRE Transactions on Information Theory 1956, 2(3):113-123. Chomsky N: Syntactic Structures New York, N.Y., Mouton Co; 1957. Kull K: Biosemiotics in the twentieth century: A view from biology. Semiotica 1999, 127:385-414. Rocha LM: Evidence Sets and Contextual Genetic Algorithms: Exploring uncertainity, context, and embodiment in cognitive and biological systems State University of New York, Ph.D Thesis; 1997 [http://informatics.indiana.edu/rocha/dissert.html]. Rocha LM: Selected self organization and the semiotics of evolutionary systems. In Evolutionary Systems: Biological and Epistemological Perspectives on Selection and Self-Organization. Edited by: van der Gulik PT, Hoff WD. The Netherlands, Kluwer; 1998:. Yockey HP: Information Theory and Molecular Biology Cambridge University Press; 1992. Woodson SA: Folding mechanisms of group I ribozymes: role of stability and contact order. Biochem Soc Trans 2002, 30(Pt 6):1166-9. Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, Agrafioti I, Arnaud MB, Bates S, Brown AJ, Brunke S, Costanzo MC, Fitzpatrick DA, de Groot PW, Harris D, Hoyer LL, Hube B, Klis FM, Kodira C, Lennard N, Logue ME, Martin R, Neiman AM, Nikolaou E, Quail MA, Quinn J, Santos MC, Schmitzberger FF, Sherlock G, Shah P, Silverstein KA, Skrzypek MS, Soll D, Staggs R, Stansfield I, Stumpf MP, Sudbery PE, Srikantha T, Zeng Q, Berman J, Berriman M, Heitman J, Gow NA, Lorenz MC, Birren BW, Kellis M, Cuomo CA: Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature 2009, 459(7247):657-62. Santos MA, Tuite MF: The CUG codon is decoded in vivo as serine and not leucine in Candida albicans. Nucleic Acids Res 1995, 23(9):1481-6. Yona G, Levitt M: Towards a complete map of the protein space based on a unified sequence and structure analysis of all known proteins. Proc In.
